The crew of Voyager come up with a solution to the Borgs problem, and are willing to share it with them if they grant safe passage to the ship and its crew.
Kes telekinetic powers grow to such a point where she can no longer control them. In order to prevent Voyager from being destroyed, she must leave the ship.
When BElanna faces the Klingon Day of Honour she must retrieve the warp core with Tom Paris, which Voyager had ejected. When the shuttle is attacked, BElanna and Tom are left floating adrift in space in environmental suits.
Chakotay is stranded on a planet where two races are trying to wipe each other out in a massive, planet-wide war.
When Seven of Nine and Kim work together in the new Astrometrics Lab, Seven interprets Kims attitude towards her as a romantic invitation, and Seven is keen to explore her new feelings.
When Seven of Nine believes that she is being contacted by the Borg, she leaves Voyager only to discover the remains of a cube that she believes was the vessel on which she was first assimilated as a little girl.
When the crew begins suffering from stranger illnesses with each passing hour, Seven of Nine is the only one who is able to expose the threat to the crew.
Voyager comes under attack from a Krenim Temporal Ship that alters the course of evolution by wiping out entire species from the timeline.
With most of the crew having abandoned Voyager and only a skeleton crew remaining, the crew realize that to stop the Krenim ship from altering history any further, they need allies.
The crew takes shore leave on a planet inhabited by a telepathic species that have forbidden all violent thoughts and actions.
When pirates steal some of Voyagers technology, Janeway and Tuvok search their home world and discover her holographic Leonardo Da Vinci who helps them in their search.
Neelix is killed during an away mission, but is revived when Seven of Nine modifies Borg technology to revive him. Soon, he begins to question all that he has been taught about the afterlife.
The crew is attacked by a species of alien that live in the human dream state. It is up to Chakotay, with extensive knowledge about the dream state, to save the ship and its crew.
The crew discover an ancient communications relay that extents to the Alpha Quadrant. They are able to send the Doctor through to a ship at the other end only to discover that it has been taken over by Romulans.
Voyager starts receiving messages from Starfleet through the communications network, now that they know that the crew is alive. Some bad news is received by the crew particularly Captain Janeway.
When Voyager encounters a disabled Hirogen ship with a wounded Hirogen aboard, Captain Janeway beams him aboard. Soon, the prey being hunted by this particular Hirogen, a member of Species 8472, boards the ship.
While re-fitting Voyagers systems with newly traded weapons, Seven of Nine claims to have been assaulted by Kovin, the weapons dealer. The Doctor soon makes a surprising discovery about the situation.
When the Hirogen capture and board Voyager they discover that the holodeck can be used to improve the hunt by putting the prey through different situations and locations.
The crew must find a way to defeat the Hirogen and reclaim Voyager.
An alien test pilot who has the capability of switching bodies manages to take Toms place aboard Voyager in order to escape the law.
Voyager is forced out of warp by the detection of a dangerous and powerful particle called Omega which only Janeway and Seven of Nine know about on board the ship.
An alien woman who requests asylum on board Voyager claims that she was onboard the ship a month ago, and she fell in love with Chakotay.
700 years into the future the Doctor must defend the crew of Voyager and set history straight when an alien race claims that the Warship Voyager was responsible for war crimes commited against their race.
In search of the vital chemical deuterium essential to Voyagers energy supplies, they discover a Demon planet with reserves large enough to replenish the ship.
When Voyager encounters a deadly radioactive nebula, Captain Janeway decides to save time by going through it and placing the crew in protective stasis with only Seven of Nine and the Doctor left to protect the ship.
An alien translator by the name of Arturis is able to finally decode the Starfleet message received by Voyager five months ago.