While on an Akritirian planet, Paris and Kim are believed to be members of the Open Sky terrorist group and are arrested, tried, and convicted of planting a trilithium-based bomb. Before they know it, they are piled into a dark, impenetrable prison.
The Doctors rehearsal of an opera duet on the Holodeck is interrupted when he is called to treat the severely injured Lieutenant Paris, who, while aboard a shuttecraft with Torres, has been attacked by an unknown alien force.
The Voyager crew picks up passengers from the homeworld Enara Prime and learns of their telepathic ability. Before long, Lieutenant Torres begins having intense, sensuous dreams of herself as a young girl involved in a forbidden romance with Dathan.
Captain Braxton of the 29th century Timeship Aeon hails Janeway and crew to inform them that the U.S.S. Voyager is responsible for a catastrophe in his century and hes come back in time to prevent that occurrence by destroying them.
The Voyager crew finally arrive home--only theyre in the right place at the wrong time, Los Angeles, 1996. Using 24th century technology Captain Janeway and Commander Chakotay desperately search for the answers needed to prevent an environmental disaster.
As The Doctor and Kes treat three injured aliens whose ship was detected adrift in space, one of them--an egomaniacal political extremist named Tieran--dies, but not before he transfers his own mind to the body of Kes.
While the Voyager crew witnesses several rare supernova explosions, Q arrives in the Captains quarters to implore the outraged Janeway to conceive his child. Q pursues the uninterested Janeway.
Voyager is seized by a macrovirus alien--an unknown gelatinous lifeform which attacks and overwhelms the crew and disables the ship--and Captain Janeway must face the fight of her life.
When the starship Voyager crew transports to a heavily secured space station to trade for supplies, Neelix meets up with Wixiban, an old Talaxian acquaintance who dupes him into using Federation shuttlecraft to traffic narcotic substances.
Disturbed by the fact that hes falling in love with Marayna, a holodeck character, Ensign Kim begs Tuvok to teach him how Vulcans suppress their emotions. When Tuvok intervenes, Marayna befriends and tries to seduce him, too.
After her shuttlecraft crash lands, a critically injured Captain Janeway is attacked by Vidiians and has a mysterious near death experience during which she encounters her father, Admiral Janeway.
During their exploration of a decimated colony, the Voyager Away Team is thrown into turmoil with the sudden onset of the Vulcan mating season.
In response to a distress signal, Commander Chakotay lands his shuttlecraft on a planets surface but is viciously attacked. Hes swiftly rescued by a colony of formerly assimilated Borg.
To improve his performance as the ships physician, The Doctor undertakes a personality enhancement project on the Holodeck, incorporating several accomplished historical figures traits and temperaments into his Starfleet database.
When a Nezu planet is bombarded by asteroids and its inhabitants face evacuation, the U.S.S. Voyager intervenes by sending Tuvok and Neelix to join several prominent members of the Nezu on a rescue mission.
After Ensign Kim suddenly exhibits abnormal behavior, he instinctively leads the U.S.S. Voyager to a mysterious planet, the Taresian homeworld. There, a shocking story of his birth is told by members of the almost exclusively female population.
When Kes undergoes treatment in a bio-temporal chamber to extend her lifespan, her cells are left in a state of flux causing her to be out of temporal sync.
After the Doctor creates a holographic wife and two children for himself, in order to enhance his performance as a caring physician, Torres modifies the program to make the Doctors picture-perfect Holo-family more of an authentic experience.
An ancient race believes itself to be the original humanoid race. One of its scientists has found Voyager, evidence that their race is of distant origin and merely immigrants in the Delta Quad. He is accused of heresy, jeopardizing his life and Chakotays.
Suspicion and animosity run rampant when members of the crew discover a secret holographic novel program depicting Seska and the Maquis leading an insurrection aboard Voyager.
One by one, Janeways crew suddenly and mysteriously trades places with mercurial aliens from Nyria III.
As they approach the heart of dangerous Borg territory, the Voyager crew witnesses the near decimation of a Borg armada by a mysterious alien lifeform which is impervious to both Borg and Starfleet technology.